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1. Amici R, Bartocci E, Merelli E A virtual laboratory for simulating metabolic pathways Meeting: BITS 2004 - Year: 2004 Full text in a new tab Topic: Unspecified Abstract: Generally, a biological system consists of interconnected processes cooperating to carry out the global behaviour of the system, by defining functional rules and relationships between the subunits. This kind of processes organization leads to a dynamic system model based on the temporal evolution of its parameters. The difficulty to establish a priori the response to new stimulus from the environment increases the complexity of this kind of systems. Among the great number of biological systems, that we can find in nature, we consider metabolic pathways, that are a collection of enzymatic processes involved in the transformation of several substances. Visiting the KEGG web site1 it’s possible to view the available pathways; we choose to study the citric acid cyclic process drawn in Figure 1 and we propose a virtual laboratory for simulating the behaviour of the selected pathway. |
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2. Angeletti M, Baldoncini A, Cannata N, Corradini F, Culmone R, Forcato C, Mattioni M, Merelli E, Piergallini R Orion: a spatial Multi Agent System framework for Computational Cellular Dynamics of metabolic pathways Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology Abstract: Missing |
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3. Angeletti M, Bartocci E, Merelli E A workflow for an orthology-based prediction of protein-protein interaction Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational proteomics Abstract: Missing |
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4. Bartocci E, Cannata N, Corradini F, Merelli E, Milanesi L, Romano P A multilayer architecture to support bioinformaticians of today and tomorrow Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea Abstract: Missing |
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5. Bartocci E, Corradini F, Merelli E, Scortichini L BioWMS: a web based Workflow Management System for Bioinformatics Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Molecular sequence analysis Abstract: Missing |
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6. Bartocci E, Merelli E, Möller S A DAS view of agent-based workflows Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea Abstract: Missing |
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7. Bartocci E, Moeller S, Toldo L, Merelli E Integration of EnsEMBL with BioAgent Meeting: BIOCOMP 2003 - Year: 2003 Full text in a new tab Topic: Others Abstract: Missing |
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8. Cannata N, Angeletti M, Baldoncini A, Corradini F, Culmone R, Forcato C, Mattioni M, Merelli E Spatial behavioral modeling and simulation of metabolic pathways with Orion Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Gene expression and system biology Abstract: Missing |
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9. Cannata N, Corradini F, Di Berardini MR, Mariani F, Merelli E, Trivelli M, Ubaldi M Modelling and simulation of the E.coli-Lambda interactions Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea Abstract: Missing |
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10. Cannata N, Corradini F, La Terza A, Merelli E, Miceli C Modelling of the eukariotic heat-shock response with probabilistic timed automata Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology Abstract: Missing |
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11. Cannata N, Corradini F, Leoni L, Merelli E, Piersigilli F A resource ontology for bioinformatics Resourceomes Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Computational systems biology Abstract: Missing |
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12. Merelli E, Mariani L, Culmone R BioAgent - A Multi-Agent systems for automatic information extraction Meeting: BIOCOMP 2002 - Year: 2002 Full text in a new tab Topic: Abstract: Missing |
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13. Merelli E, Romano P, Scortichini L A Workflow Service for Biomedical Application Meeting: BITS 2004 - Year: 2004 Full text in a new tab Topic: Computer algorithms and applications Abstract: The proposed work has been developed in the O2I (Oncology over Internet) project context. O2I aims to develop and prototyping an integrated platform suitable to support the biomedical and clinical research during the retrieval, from Internet, and the integration, in a standard format, of both structured and textual information. Usually biomedical researchers interact, step by step, with the Web to query, select and integrate information; during the daily work, a bioscientist would benefit from a powerful tool able to execute queries consisting in several interrelated activities. In this scenario, the biomedical research process can be formulated as a workflow of activities, whose execution must be supported by a suitable middleware. We propose a workflow service agent to support bioscientist during the creation of their own workflows, by also monitoring their execution. In particular, in the O2I context, we are experimenting BioAgent an agent-based middleware developed at Camerino University; the middleware can be configurated by plugging-in agent-services to support the tool/services integration for a specific domain. |
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14. Romano P, Arrigo P, Mauri G, Merelli E, Milanesi L Oncology over Internet (O2I): information querying, filtering and retrieval by means of standard formats Meeting: BIOCOMP 2002 - Year: 2002 Full text in a new tab Topic: Abstract: Missing |
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15. Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L Biowep: a workflow enactment portal for bioinformatics applications Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea Abstract: Missing |